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Domain assignment for 10141.ENSCPOP00000018781 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  10141.ENSCPOP00000018781
Domain Number 1 Region: 184-333
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 1.26e-22
Family Retrovirus capsid protein, N-terminal core domain 0.0078
Further Details:      
 
Domain Number 2 Region: 340-420
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.56e-20
Family Retrovirus capsid protein C-terminal domain 0.0012
Further Details:      
 
Domain Number 3 Region: 1-88
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 8.12e-18
Family Mason-Pfizer monkey virus matrix protein 0.00059
Further Details:      
 
Domain Number 4 Region: 461-481
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000879
Family Retrovirus zinc finger-like domains 0.0019
Further Details:      
 
Weak hits

Sequence:  10141.ENSCPOP00000018781
Domain Number - Region: 438-458
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00732
Family Retrovirus zinc finger-like domains 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 10141.ENSCPOP00000018781
Sequence length 492
Comment (Cavia porcellus)
Sequence
MGQSFSSPFLKILKHLLSMYGISLRLTDLEMYVHTIKEYNPWFPDEGTLDVELWRRARAS
IENAMRQDEKIPLCFWAIWSVVYSLLKAMEDEHIVENLQQEIKPVIHELPLTEAEQTVVQ
NDAIALTSEKASKPKAVQCLTQVVEQLYIKQSLPIYPSAPPPSNPDCKKTKLALANMPET
GDSEDEETSVFAFPVIRPQPADGVTPPPRWEGFNIKIKKAVTLYGPQAHYTRELLMAVAD
RYGNLAPYDWRTLAKILLKEPEYLQWHMWFMEGCAEKARQNAEDRDPNVRLIFYPMLSGT
GFYDTVEHQAVAPREIHAQLRNIALEAWDKMWPQGSEYESWAKVLQGTNEPYVEFIARLQ
NVIEKTIVGKDLQQHLLKLLAFENANDECKKVLIPIKNTGTIDNFIKQCKDLSSESKKMQ
LFAETMVTTWNNLQSKKFGCGQTGHVNRACPKLSGKKSKTPGLCPKCHKGRHWYCECRSK
QVNSAEQKGNGK
Download sequence
Identical sequences 10141.ENSCPOP00000018781 ENSCPOP00000018781 ENSCPOP00000018781

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