SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 104341.JGI108169 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  104341.JGI108169
Domain Number 1 Region: 251-321,351-578,633-742
Classification Level Classification E-value
Superfamily Cysteine proteinases 1.14e-80
Family Ubiquitin carboxyl-terminal hydrolase, UCH 0.0012
Further Details:      
 
Domain Number 2 Region: 114-214
Classification Level Classification E-value
Superfamily RING/U-box 1.88e-28
Family Zf-UBP 0.00014
Further Details:      
 
Domain Number 3 Region: 585-649
Classification Level Classification E-value
Superfamily UBA-like 0.00000000000000234
Family UBA domain 0.0036
Further Details:      
 
Domain Number 4 Region: 1-80
Classification Level Classification E-value
Superfamily RING/U-box 0.00000000000000965
Family Zf-UBP 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 104341.JGI108169
Sequence length 743
Comment (Postia placenta MAD 698)
Sequence
MVTCGHLVEIARLQLPKLSQSVHREECTQCFDTQDHPLGIDVCLTCFNGGCLGKERHHAR
THVHKTGHGFSLNIKRKLKPSANRVDEEEPPAKMTKLAIVEDRDEDKYEYKTVLKCWKCE
PENGLEIPDAMADPHENLWLCLTCGSLGCGRQQYGGLGGNGHGLQHYEETRHPISVKLGT
ITPEGNADIYCYICNDAKQDPELAAHLATFGINVQTQTKTEKSMTELQIEHNLKFDFSLT
DESGKALEPVFGPGLTGLSNLGNSCYMASVLQTVFSLSVFRQRYYPSASAHWETCTETLP
ASCVDCQMHKLADGLLSGRYSHPRPTSSGASRLKETNPLAHDSPTPIFQEGVRPSGFKAL
IGKGHEEFSTMRQQDSEEFFTHLLTVLRRHAKKTSGMPNHDPTEVFAFGMEQRLECGECH
RVRYRVDGTDVVSVPVPARETGKDAEGRTQYAEVALGECLDILTGTEALEYTCPGCQKRV
IATKRSRFATFPQVLMVHAKKFQLVNWVPTKLDIPLNVSDTLQLDQYLGRGLQPGEQKLP
DDTAGTRTGAPPLEAMGFPTIRCQKALLATGNNDAEAAMEWLFAHMEDPDIDAPIQAAGS
GSSAPEPSQEQVSMLSEMGFTHAQARKALRETGGDAERAVEWLFSHPDDNGEDAAPSGSS
ETPESSGTGGSAELPARYRLKAFISHKGPSVHSGHYVAHIRVEDAAVGGESWVLFNDEKV
VKADEESVRELKKLAYLYVYERE
Download sequence
Identical sequences 104341.JGI108169 jgi|Pospl1|108169|estExt_fgenesh3_pm.C_1270002

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]