SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 104341.JGI53856 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  104341.JGI53856
Domain Number - Region: 237-259
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00314
Family Retrovirus zinc finger-like domains 0.0059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 104341.JGI53856
Sequence length 381
Comment (Postia placenta MAD 698)
Sequence
MSSPSTTPDKETLKLLLPLCYDGKTVIECDRFLSQLCIYWLVNTSLTTIELKVQVALSLL
DRNACAWATPYFSQLASVQMGVQGVTTPFRNEAAFTATFKARFGNLDDEAAAQVELAKLC
VDKSVHEKRTAAEFSTLFKGPADRSGYGDLELHDKYLSGIPPAYAVPTCDTFITWQEAEK
RTTEVEQILDISRAYLPELNNFFSARGRGHGGARGGAHQSHAASASINAAVGKGDFPSSC
FGCGKQGYQRFECPNCKNKPYTKRADARAMVASGSTQVATSASVMTSPSASISAASAKSE
PSELVDSMAQVKLMCEELEHYQVMKEDGFKSGPRFVPHTSGREYHVTNMMYCRLQWCMSW
TRGPSTFTSQFDSKGKDGTRT
Download sequence
Identical sequences jgi|Pospl1|53856|e_gw1.130.8.1 104341.JGI53856

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]