SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 104341.JGI99936 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  104341.JGI99936
Domain Number - Region: 410-431
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0889
Family Retrovirus zinc finger-like domains 0.0089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 104341.JGI99936
Sequence length 471
Comment (Postia placenta MAD 698)
Sequence
MSNISSTITSNNAVNPVPLGLPALAGSPLLQYDRADRCFVTSTKRAPIYPRGGTWCRATG
PNPQVIAHQELVSYYQRHPPAHPEDVFTILRIDVEPTQTAENVQSPINEQPLELPEVQYV
PIEIPDIELPPAPPAPTNTPVEVPMATFTQADIDQRIAVALAAYQSQQSTANRPLRLDIP
APEPFSGKAEDLRRFIQCILSYFVATNNTRLSDEAKIAFTVALMRKDLGKTWADAYYEKS
AGGVQVYSTWADFVAALEEVFPEHGTRIKAHQILMKLPERQKDRKTALSLGNYVTRFEQL
ASKAQLKDAEVNGTNHVENDYHTLHANFVKGLPKELYFALATRVARDRPNTMKAWYDKVR
NADAAKQGALVVTDTRDYGEPMDIDAAAVASTFAFTSGGKKWELGAVLNEADRKLHRDGN
LCFYCHIKGHSIEPRGMPSTTDTGPKCPYVSLHLRVRHDVTLPMDLMRATR
Download sequence
Identical sequences B8PLB2
jgi|Pospl1|99936|fgenesh3_pg.217__19 104341.JGI99936 XP_002476457.1.31404

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]