SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 15368.BRADI3G27140.1 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  15368.BRADI3G27140.1
Domain Number 1 Region: 289-362
Classification Level Classification E-value
Superfamily RING/U-box 0.000000000134
Family RING finger domain, C3HC4 0.031
Further Details:      
 
Domain Number 2 Region: 200-234
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000258
Family Retrovirus zinc finger-like domains 0.0068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 15368.BRADI3G27140.1
Sequence length 903
Comment (Brachypodium distachyon)
Sequence
MAVYYKFKSAKDYDSIPIEGQFISVINLKERIFESKHLGRGKDFDLMISNAQTDEEYAEE
SIMIPKNTSVLIRRMPGRPRMPIVTEPEEIIGAENRVGEVMPSGSAFLGDSSMKYPEESE
WDDEFGSSLYVYDSVPSEPASQAIGASNENEIDEDSKIKSLIDTAALDYSQIPDGHGSGR
GYGRGMGGRMMSGRGFGRELGRLESRTPPPGYVCHRCKVPGHFIQHCPTNGDNRYDVKRV
KPPTGIPKSMLLATPDGSYALPSGVGAVLKPNEAAFEREIDGLPTIRSVGDLPPELHCPL
CKEVIKDGVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRIL
EAPPTSSTGNAGSMAQLQAMETALPVQPKVRSPAVSAASKEEPKAPTPIEESPYAHSHGG
VKANVGVSSSDKKAAIITDATEGTMDSKNVKEGKTPEATHVAKELHGKFPAGEQGDNLLV
LFPGKKKKKKAARAQGNAEEEVKNYQDNGAQNFVAMPFVPAEGFNPYCRGGMPLAMEYIG
AQFQAPMPYMGYPPPGPFDHFGVVLPQPQDHFMPPAYMMPTVPRDLSHLAVNSMGMNMGP
QVVRRDEFEAMEPDRRRHEMDRFNGSSCPVFRFTVLTPTQCCTEWERERELARRWERERE
RQREDGHDQDRYQHGDREYPREPSGAINDSSSTRPHDRSRPQLKKRSERALTLPSLSPKR
HSRRSPHRSSNSGKKRSSPDRYDDPPLPPPPPPSMSRHKAEHVKAAGAATGEDQRSKSKA
SVFSRISFPGDSNTSDAKRSHRSSSNKRPGSSSSSKRGAEAGNNSRHHRRERETTLVKEE
RQRPAAIQYDEEEQSSEEEKHFKRRMPSSTQERVREREEPQDLRRSRERGEGHRLNGGGH
KRR
Download sequence
Identical sequences 15368.BRADI3G27140.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]