SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 15368.BRADI4G37160.1 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  15368.BRADI4G37160.1
Domain Number 1 Region: 57-149
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 3.09e-26
Family Canonical RBD 0.0032
Further Details:      
 
Domain Number 2 Region: 147-173
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000141
Family Retrovirus zinc finger-like domains 0.0041
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 15368.BRADI4G37160.1
Sequence length 269
Comment (Brachypodium distachyon)
Sequence
MSRRRRQGSDSDGEDDSFLYRYPLPSAAAGASSASASGQGGGNKPGRGGSGSGGLAPSKS
TVYVSNLDFALTNSDLHTLFSRFGKVARVTVLKDRESRRSRGVAFVLFVRREEAAAAAAE
MHGKVLNGRTLAASIADDNGRAAQFIRRREYRDKSHCYECGEEGHLSYECPRNQLGPRER
PAPSKKSRRGGGGGGGGGGGRGVREIAGASYQSDEDDAVATAFEDDRWASVVDTRGEEEK
AAEKEGRATAARKEKRKGYFSDESDEDED
Download sequence
Identical sequences I1ISJ7
15368.BRADI4G37160.1 EG:BRADI4G37160.1 XP_003578586.1.954

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]