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Domain assignment for 164328.JGI86754 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  164328.JGI86754
Domain Number 1 Region: 358-490
Classification Level Classification E-value
Superfamily Ribonuclease H-like 5.44e-26
Family Retroviral integrase, catalytic domain 0.0055
Further Details:      
 
Domain Number 2 Region: 722-918,949-1131
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 5.34e-22
Family Reverse transcriptase 0.04
Further Details:      
 
Domain Number 3 Region: 176-210
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000126
Family Retrovirus zinc finger-like domains 0.0027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 164328.JGI86754
Sequence length 1179
Comment (Phytophthora ramorum)
Sequence
MKMYLMSKGLWEAVSGEAGSTAKEQQAHAAIVLNLNDSQLMHVATSTTAKEAWDTLKKFH
KTQDMANRLWLKETFSAFKFTASSVGKHVTELEKLVMEMKNAGCEPTEEDVCATMLRSLP
SSYEALVQAFRMSVSEFKLADLVSKLVAEEVRQKDSNRIEEATALLASKGNGKQQQKKKN
ARGMRKKGPFGKCFNCGKPGHYARDCRSEASPDEDVQDQSNIVFHATEAFASECWVMNSG
ASAHMCKTRDAFQEYSGCVVKRGGQVVATGRKQGKLMFLNIEGGDECHAAEDNMDLWHRR
LGHASFGTLNSMIKDGKLKGALAEPGTVCGVCATAKQARKPFKSTKEGLEARESARKDTT
VCSDVLGPVAPAPKSGYKYIVSFIMMKSRFVTIYPLRKKSEVCEAFKKFLKEAETSAGIK
VKVLRSDNGDHQQEFTVPYNPQQNGMAERMNRTLVEMTRCMLXESGMDKSYWCEAIMTAA
DIRNVLPNTSSHTPAHSAGFQRAPRLEHMRVFGTECYAHVTKQKRKKLDNSGIKCVFLGY
AKQHKAYRLLDPSDGSIVISRSVTFAEAPPVTMAKTRNQEVIDIIDNDEKEERTEEPSVD
DGFSTPPTRPLHEPEEHSGPTGSVPTRGSSTPGRDGEEEWMVRPARKRRGVVRYQDEFPG
TRRGEFNLDDYEAEFVSLYCFLTEDDDGERAVSYDEVMRSKYKDEWLRAMESEMKSLEDH
RTWKLVDMPSDKKAIGCKWVFRIKRDPSGKIIKFKARLVAKGFTQPEEDMEAENVDVDTA
FLYGDVEEELYMDQPDGFEDQVNPTKKCLLMQALYGTKQAARQWNSKLNKHLEGQGFHRS
AADPCVYVRRSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGI
EIHRNRDDKTIVMNQRAYIQRLAEEFGVEKCKAVHTPADSNSKLVKPSEDEDFVPRYPYR
ELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTPDLGLVFNGGT
KGELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAT
QEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRVKVEDK
VIVLEYKPVRGCWVWVQGVCACACLYACAGELCGGVKCS
Download sequence
Identical sequences H3H7M7
jgi|Phyra1_1|86754|fgenesh1_pg.C_scaffold_1242000001 164328.JGI86754

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