SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 164328.JGI87459 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  164328.JGI87459
Domain Number 1 Region: 211-237
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000921
Family Retrovirus zinc finger-like domains 0.0066
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 164328.JGI87459
Sequence length 374
Comment (Phytophthora ramorum)
Sequence
MSSAHDASTKVSIDKFNGDNYATWNRYMRGVFLTKSVWHVVNRETTPSFTDSRPKDEYVK
SSNIAFGLMLLHMDADYHHVVDDCEEAWVAWTRLKTLYGGSQKAGRIYLKRQLFSMEMSE
GGNVLHHCNEVLNISAKLSSIGAKMKDEDVAICLLRSLPKSYENVVLNLEMSSAELRSQD
VVKVLTNEHIKRQGGKTATVKTEDAAKAFNTDRESRQCTYCGKLGHTVDKCWTKQKDENR
GPRRGGNGNGRGRGANNAQWRNDDASYDYGYGYDRVAFAVSLECGISTGKDMLGMWAVDS
GATHHICNDKAKLLSRRRLGQLPYTDPDYAFAMDATPTTTARINKFNGTNFHTWKFKMQM
VLEERELWEVTSGE
Download sequence
Identical sequences H3H9D3
164328.JGI87459 jgi|Phyra1_1|87459|fgenesh1_pg.C_scaffold_2016000001

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]