SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 164328.JGI87713 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  164328.JGI87713
Domain Number 1 Region: 95-122
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000502
Family Retrovirus zinc finger-like domains 0.0066
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 164328.JGI87713
Sequence length 320
Comment (Phytophthora ramorum)
Sequence
MEMSEGGNVLHHCNEVLNISAKLSSIGAKMEDEDVAICLLRSLPKSYENVVLNLEMSSAE
LRSQDVVKVLTNEHIKRQGEKTATVKTEDAAKAFNTDRESRQCTYCGKLGHTVDKCWTKQ
KDENRGPRRGGNGNGNGRGRGANNAQWRNDDASYDYGYGYDRVAFAVSLECGISTGKDML
GMWAVDSGATHHICNDKAKFAHLIERNEGELSAADGNKAAIMGVGTIVERVVLPNGDERD
IEIKNALYVPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWL
QTPQRAANAATSGKTVDLHA
Download sequence
Identical sequences H3HA03
164328.JGI87713 jgi|Phyra1_1|87713|fgenesh1_pg.C_scaffold_2454000002

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]