SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 29760.GSVIVG00025147001 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  29760.GSVIVG00025147001
Domain Number 1 Region: 487-622
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.11e-35
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Weak hits

Sequence:  29760.GSVIVG00025147001
Domain Number - Region: 220-261
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000141
Family Retrovirus zinc finger-like domains 0.0065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 29760.GSVIVG00025147001
Sequence length 632
Comment (Vitis vinifera)
Sequence
MATKASIFSSVISGSPMITSEKLVGSENYLSWSASVELWFMGQGYEDHLITQETDIPEVD
RVQWRKIDAQLCSVLWQSVDPRILLHLQAYKTCFKFWTQAKGLYTNDIQRLYKVASAIVH
FSQQDLDLSTYIGQIASLKEQFLTVMPLTPDVGAQQTQLDKFFMVLTLIGLRPDLEPIRD
QILGSSSVPSLDDVFARLLRISSTQTLPSDSASDSSVLVSQTTSRGGRSGTRGRGQRPHC
TYCNKLGHTRDRCYQLHGRPPRTAHMAQSSDSPLPQPPSSSASQTSQASIASVAQPGNAS
ACLTHTSSLGPWILDSGASDHLSGNKDLFSSITTTSDLPTVTLANGSQTVAKGIGLALPL
PSLPLTSVLYTPECPFNLISISKITRTLNCSITFSDKFVTLQDRSTGKTIGIGRESQGLY
HLTSDSSPAVCISTDAPLLIHNRLGHPSLSKFQKMVPRFSTLSSLPCESCQLGKHTRVSF
PKRLNNRAKSPFELVHTDVWGPCRTASTLGFQYFVTFIDDYSRCTWLFLMKNRAELFSIF
QKFYTEIQIQFNISIRVLRSDNAREYFSAQFTSFMSHHGILHQSSCAHTPQQNGVAERKN
RHLVETARTLLLHNHVPFRFWGGCCSYRLLFD
Download sequence
Identical sequences 29760.GSVIVG00025147001

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]