SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 298386.PBPRB0415 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  298386.PBPRB0415
Domain Number 1 Region: 6-487
Classification Level Classification E-value
Superfamily (Trans)glycosidases 3.75e-90
Family Amylase, catalytic domain 0.001
Further Details:      
 
Weak hits

Sequence:  298386.PBPRB0415
Domain Number - Region: 510-541
Classification Level Classification E-value
Superfamily Glycosyl hydrolase domain 0.00238
Family alpha-Amylases, C-terminal beta-sheet domain 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 298386.PBPRB0415
Sequence length 599
Comment (Photobacterium profundum SS9)
Sequence
MTDKIKPNVPAKHVVYQVFTRLFGNTNTTNKPWGTLEENGIGKFNDFTDKALSEIKQLGV
SHIWYTGVPHHAVVRDYSEYGINSDHPSVVKGRAGSPYAVKDYYNVNPDLAVDPANRLEE
FKALIERSHRHGLKVIIDIVPNHVARRYQGITNPAGVENFGASDDTTLVYHRDNNFYYIP
DEAFTVPDAENGYLPLGGEAHPDLDTPYEEFPAKWTGNGSRLAKPQFDDWYETVKVNYGV
KPDGSKDFDELPQGFNKKAHTEHFEFWQGKSVPDSWVKFRDIALYWLALGVDGFRYDMAE
MVPVEFWSYMNSSIKQVNPETFLMAEVYQPDLYRDYIHLGKMDYLYDKVDLYDALKLVMQ
GRGSTDAIVEVQQQLMDIEHHMLHFLDNHDEQRVASPEFAGDANKGKPAMLVSTTLSTSP
TMIYSGQEVGEAGVEDAGFGLHSRTTIFDYFGVPSHQRWMNNGAFDGGLLTDEEHELRDF
YQRLLNFSLTSTAMLGEYQEIHRHNRDHSDTYNEQLFCFSRYDQQQKLLMVANFAEHDQG
MVQIKLPSSLIDAWQLDNGEYTLTEQLDGNHTVVLSVANGIGELQLSISSLSSMILQLN
Download sequence
Identical sequences Q6LK92
gi|54302095|ref|YP_132088.1| 298386.PBPRB0415 WP_011220499.1.54600

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]