SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 29883.JGI300887 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  29883.JGI300887
Domain Number - Region: 388-416
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0115
Family Retrovirus zinc finger-like domains 0.0049
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 29883.JGI300887
Sequence length 489
Comment (Laccaria bicolor)
Sequence
MSSIRKDAPRLPRPAARYWKGKAPKGAAEAGSDSEDEATATPLEEGDVPIQDHQDASEDE
EEEDGIQLRRDVAKSKSISVALKDVSVSKEGRVIIAGREESGRTVVEAEGMTYHYLFLLF
CRTREAILKLICKESEEEESDEEQTKPGKKSAEGSAEESSEYESDSEEEEKPKLQFRPVF
VPKRARITISEKEAIAQDTQEALAKKEAEAEERRKQSHDLVAESIRRELAEKEKDEEIPD
VDDTDGLDPAAEFEAWRLRELNRIKTEKEEELRREEEREEIERRRAMPEEQRMKEDLERA
QKLREDKPKGQQKFLQKYWHKGAFHQDEEILKRHDFTEATESTIDVSMLPKVMQVKNFGK
RSRTKYTHLLDQDTTAPSGGFGGTAPVRAGGTSLDGGGCFLCGGPHLKKDCPQNTGPLSE
RGSGANAGPIGSRQFGGRRDQGSWRDDDGDERIAARKDYRRGNDRAEDDVDNYHRSRSPN
GREKRRRVG
Download sequence
Identical sequences B0CQT5
XP_001873902.1.58555 29883.JGI300887 jgi|Lacbi1|300887|eu2.Lbscf0001g03360

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]