SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI102783 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI102783
Domain Number - Region: 232-271
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0136
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI102783
Sequence length 519
Comment (Physcomitrella patens)
Sequence
MWSRLRGSILFQAVLFSVPSQGTLFSVNGFLKGKNGGESLAARANFESKLRSRELERGAS
CFGSGKERHRIWIFLLRRVLGKTENLQATELLREFERQYSQLSKVEKLTLESNKVDLFLQ
AADGKLQEKLEPVLEDKEEDEGLTMKWKNIEDAVGLLTKKEKKKDRSNIQKTVQAPKAPV
RTTPPTMPTVQPSTSLSKKADMGMEEIIRGMRDLQIKLTRLEENTSINNSKNVSKQGYVQ
RCIWCDDASHTRKDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGEMRALVQDYL
KEHETVVRESASYGVRVDDAIGGSTETSEFWASAVSTMQEGKLPQEALLRTAATIRGRTG
WEDPVESLSVHAYIAKSQHEALMEEKRRGNFDDTREGNSFKRQTRGDKAREATSQELPVK
DTSASLGEKTTETKDKGKSIAYKLLSDIEAATNLKGVLEERILNAKVEFTLKEVLGITKK
EFHDVIIDSIKRKRQLMSETGMSHAIDARICRDEEEVDM
Download sequence
Identical sequences A9U5P9
jgi|Phypa1_1|102783|fgenesh1_pg.scaffold_772000002 XP_001786183.1.60028 3218.JGI102783

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]