SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI65084 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI65084
Domain Number - Region: 46-85
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00471
Family Retrovirus zinc finger-like domains 0.0066
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI65084
Sequence length 321
Comment (Physcomitrella patens)
Sequence
MPTVQPLTSLSKKADMRMEEIIRGMRDLQIKLARLEKNTSTNNLKNVSKQGYVQRCIWCN
DASHTRKDCNEFNNMIRQGIICWKDGKIALKDRKDLLQTNFGKGGMRALVQDYLKEHETA
ARESASYGARVDDDLGGSMETSEFWAFAISTPVESLSVHAYIAKSQHEALMEEKRRGNFD
DTREGNSFKRQTRGDKAREAASQELPIKDTSVSLEEKTRETKDKSKSIAYKLLSDIEAAT
NLKGVLEERILNAKVEFTLKEVLQIAKKEFHDVIIDSIKRKRQLMGETGMSHAIDARICR
DEEEVDIGYRQPTNEKSGYNQ
Download sequence
Identical sequences A9REI9
3218.JGI65084 jgi|Phypa1_1|65084|fgenesh1_pg.scaffold_4000199 XP_001752553.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]