SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI65963 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI65963
Domain Number - Region: 230-268
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.023
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI65963
Sequence length 701
Comment (Physcomitrella patens)
Sequence
MDPSIASMFQAFSLSMQQQQSNDRKEALATKALQAVVNKIDQFDGRNISRYLRCYVCEME
LNRVSEKKMVALFGLAMIAEIRDHITSITDRYGNSWEVFSHTLKDEYFLEDVDCVTKKLF
LEWIERPNKNLQYSQLSKVEKLTLEPNKVDLFLEAANGELQRKLELLLEDKEEDEGLTTK
WKNVEDAMGLLTKTDNAYNMGMEEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVRRC
IWCDDASHTRKDCNEFNNMIRQRIICWKDGKIALKNGEDLLQTNFGKGGMRALVQDYLKE
HETSARESASYGARVDDGIGGSTKTSKFCAYAISTMQEGKLPREVLLRTAATIRGVLEEC
ILNAKIEFTLKEVLRIAKKEFHDIIIDSIKQQRQLMGETGMSHAIDARIYRDEEEVDIGY
KQPTNEKNGYNQRVRFKDSSDKEMETLSHYTRKHWAKATTEVLVKVGDIEEPIVALVDHD
VKIRIGDVATEQHFFVQDTTSYPLILGQPYIMATRMETKVLDDGSAYTTVRSEDGKKAVQ
FLTVSPNHEWNRDRLREKPLPKIVEGFKDFGEEVLSRDEGAFDANFIGILENGNIMYKKV
DDFKRKERKRLYDIEGQLRKLGTLQDDERILSVYEENGLEDSLELITSIGIGDNDKIVEI
HSRVVYTMLESFQAPEVTVETRYKMADKKVKPVAGLLLEDS
Download sequence
Identical sequences A9RGX1
jgi|Phypa1_1|65963|fgenesh1_pg.scaffold_8000165 XP_001753356.1.60028 3218.JGI65963

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]