SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI67274 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI67274
Domain Number - Region: 277-315
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0191
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI67274
Sequence length 676
Comment (Physcomitrella patens)
Sequence
MDPSIASLFQAFSLSMQQQQSNDRKEALATKALQAVVNKIDQFDGRNISRYLRCYVREME
LNRVSEKKMVALFGLATIPEITDHITSITDPYGISWEDFSHALKDEYFLEDVDRVTKKLF
LVWIERPNKNLQATELLREFERQYSQLSKVEKLTLEPNKVDLLLQAADGELQEKLKPLLE
DKEEDEGLTTKWKNVEDAVGLLTKKERRKDRSNIPKTVQAPKARVRKTPPIMPTVQPSTS
LSKKADMDMEEIIRGMRDLQIKLARLEENTSMNNSKNVSKQGYVQRCIWCDDASHTRKDC
NEFNNMIRQGIICWKDGKIALKDKEDLLQTNFGKGGMRALIQDYLKEHETAARESASYGA
RIDDDLGRRTETSEFWASAISTMQEGKLPQKALLKTTATIRGAIGWEDPVESLSIHAYIT
KSQHEALMEAKRRRNFEDTREGNSSKSIKRKRQLMGKIGMSHAIDARIYKDEEEVDIDYK
QPTNEKNGYNQRVRFEDYSDKKMETLSYYTRKHWARATTEVLVKVGDIEEPIVALVDHGY
EINLMSKDLYKKQKWPIDMEHGWAIRAANNTWGQLYGACPDVKIWIGDVATEQHFFVQDT
TSYPLILGQPYITAIRMQTKVLDDGSTYARVRSEDGRKVVQFLTIPPNHEQNRDRLKEKP
LPKIVEGFKDFGEVPL
Download sequence
Identical sequences A9RK88
3218.JGI67274 jgi|Phypa1_1|67274|fgenesh1_pg.scaffold_14000062 XP_001754637.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]