SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI69102 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI69102
Domain Number - Region: 22-55
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0115
Family Retrovirus zinc finger-like domains 0.0062
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI69102
Sequence length 574
Comment (Physcomitrella patens)
Sequence
MRDLQIKLARLEENTSTNNLKNVSKQGYEQRCIWCDDASHTKKDCNEFNNMIRQEIICWK
DGKIALKDREDLLQTNFGKEGMRALVQDYLKEYEIVARESASYGARVDDDLGGSIETSEF
CACAISTMKEGKLPREALLRTAATIRGATGWEDLVESLSVHVYIAKSEHEALMEEKRREN
FDDTREGNSSKRQTRGDKAREATSQELPVKDTSASLEEKTRETKDKDKSIVYKLLSDIKA
ATNLKGVLEERKLNAKVEFTLKEVLGIAKKEFHDVIIDSIKQKRQLMDKTRMSHAIDVRI
YKDEEEVDIGYKQPTNEKNGYNQQVHFEDYSDKEMETLSHYTRKHWARATTERDYGGTKE
EVLSRDEGAFDASFIDILENGNIMYKKVDDFKGKERKRLYNIEGELCKLGTLQDDERILG
IYEENRLEDLLELITSIGLEDNDKIVEIHSREVYTILESFQAPEVTVETRYKTADKKVKR
IAGPLPEDSKEQMGEASKEASLRDLMSIGHQFTKETFEELKIDSGGSLLPKKITCFKKML
TKQGRSFAFESYEIGCMDPNIITRMVIFTVPHVP
Download sequence
Identical sequences A9RPM5
jgi|Phypa1_1|69102|fgenesh1_pg.scaffold_21000210 3218.JGI69102 XP_001756143.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]