SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI69644 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3218.JGI69644
Domain Number 1 Region: 130-167
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000009
Family Retrovirus zinc finger-like domains 0.0059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI69644
Sequence length 337
Comment (Physcomitrella patens)
Sequence
MFVKESQLVMVAASLARAKVWEECHYDQLLMVGTTMIPSVGNQVPMTNTMIGSYPQMIAP
SMKNPNSQGVVNATPLQAIPHVATYPSPMAYRQLEVPMNVTINDSNETLLLNLMKKMEEL
AVHMTKDKEKRHKPSNMRPNVWCNNCKGQGHFDTECPSPHQKMGQYMYCGGKHNTANCWY
LPRQQTMIQPTVWDVNQVQTGNMGRWNGNRNNRVNRGFKNFQNPNYNQSYGTNMQNGIIS
TSGGSDSRSIDKKSAKRQRTNSNIGKIDTSPGQQTNTKICSIIGRSVTVTTQFDQYIGAS
TNFTSTNITPIRWTVAPVKGSNFQGAVATRNRGSTNS
Download sequence
Identical sequences A9RRY4
jgi|Phypa1_1|69644|fgenesh1_pg.scaffold_24000036 XP_001756732.1.60028 3218.JGI69644

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]