SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI70224 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI70224
Domain Number - Region: 304-343
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0288
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI70224
Sequence length 907
Comment (Physcomitrella patens)
Sequence
MENENKNFEGFLGGVSGGDSSKGQGMHMDPSIASMFQAFSLSMQQQQSNDRKEALATKAL
QAVVNKIDQFDGRNISRYLRYYVREMELNRISEKKMVELFGLATIPEIRDHITSITDRYG
NSWEVFSHALKDEYFLEDTDRVTKKLFLEWIERPNKNLQATELLREFERQYSQLSNVEKL
TLEPNKVDVFLQAVDGELQGKLELLLEDKEEDEGLTTKWKNVEDAVGLLTKRERRKDRSN
IPKTVLAPKAPICTTPPTMPTVQPSTSLSKKVDMGIQEIIRRMRDLQIKLARLEENTSTN
NSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICWKDGKIALKNREDLLQTNFG
KGGMRALVQDYLKEHETAARESASYGARVDDEKLVEVRKLRQTRGDKAREAASQELPVKD
TSTSLGEKTKETKDKGKSIAYKLLSDIEAATNLKGVLEERILNAKVEFTLKEVLRIAKKE
FHDVIIDSIKRKRQLMGEIGMSHPIDARIYRDEKEVDIGYKQPTNEKNGYNQQVRFEDSS
DKEMETLSHYTRMHWTRPTTEVLVKVGDIEEPIVALVDHGSEINLMSKDLYKKQKWLIDM
EHGWAIRAANITRGELYGACSDVRIWIRDVATEQHFFVQDTTSYPLILEQPYITVTWMET
KVLDDGSAYTRRDYGGTKEEVLSRDEDTFDANLIGILENGNITYKKVDDFKRKEKKRLYD
IDEQLCKLGTLQDDERILGVYEENGLEDSLELITSIGLGDNDKIIEIHSREVYTILESLQ
APKVTQETRYKTADKKIKHVAGPLPEDSKEQMREASKEASLRDLMSIGHQFTKETFEELK
IGSDGSLLLEEITCLKKMLAKQGRSFAFKSHEIGCVDPNIITPMVIFTVPHVPWNQRPIP
VSRAHLP
Download sequence
Identical sequences A9RT60
XP_001757367.1.60028 jgi|Phypa1_1|70224|fgenesh1_pg.scaffold_27000053 3218.JGI70224

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]