SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI70854 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI70854
Domain Number - Region: 316-359
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00314
Family Retrovirus zinc finger-like domains 0.0031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI70854
Sequence length 451
Comment (Physcomitrella patens)
Sequence
MSGDYNYDNHRRNQQVKERQERFYFRNLLRQQQEGIQRKKLRWSWIKPWLHACASIRAYP
SSERSAILYHYIPLEKLPRALIGDTASNEVLESSSVIIRSLSTEELNNSDSLQERRVSKY
QIGTKRRIHINIARRPAQVPMTEEAPAVPIAVQMGAIGDHTTSVAPLLTFNGWPGSDPDQ
HLSQFLTACVANNGKTEDVWVWEECDYDQLLMVGTTMIPSVGNQVPMINTMIESYPRIIA
PSMGNPNSQGVVNATPLQAIPPVATYPLPMAYQQLEVPMNAIINDSNEALLLNLMKKMEE
LAVHMTKDKEKRHKPSNMRPNVWCNNYKRQGHFDTECPLPHQKMGQCMYCGGKHNTANCW
YLPRQQTMIQPTIWDGPTHDINSANYRRNKQTTGITGTSGGSDSRSIDKKSAKRQRTNSN
IGEIDTSPGQQTNTKICSIIGRSVTVTSQFD
Download sequence
Identical sequences A9RUV2
XP_001757980.1.60028 jgi|Phypa1_1|70854|fgenesh1_pg.scaffold_30000014 3218.JGI70854

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]