SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI71376 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI71376
Domain Number - Region: 79-118
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00942
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI71376
Sequence length 393
Comment (Physcomitrella patens)
Sequence
MGLLTKKERRKDRSNILKTVQAPKAPVRTTPPTMPTVQPSTSLSKKADLEMEEIIRGMRD
LQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICWKDGK
IALKDREDLLQTNFGKGGMRALVQDYLKGHETVARESASYGARVDDEIGGSTETSEFWAS
VISTIQEGKLPREALLRIPATIRGRIGWEDPVESLSVHAYIAKSQHEALMEEKRRGNFDD
TREGNSFKRQTRGDKAREAASQEVPVKDTSASLGEKTKETKIKGKSIAYKLLSDIKAATN
LKGVLEERILNAKVEFTLKEVLEITKKEFHDVIIDSIKRKRQLMSETGMSHAIDARICRD
EEEYVPADCNGVTEPDHSVFVLELVDAPNIRGN
Download sequence
Identical sequences A9RWA1
XP_001758340.1.60028 jgi|Phypa1_1|71376|fgenesh1_pg.scaffold_32000088 3218.JGI71376

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]