SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI72178 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI72178
Domain Number - Region: 182-222
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0154
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI72178
Sequence length 599
Comment (Physcomitrella patens)
Sequence
MRPDLVGQPNAVQLREHPGLPTGLLANMRLELVGRLNVVPITGAPIPFQAVPSFVLFREH
SQWIQDREYKAVSKISSLGCSGFSEMSRDLSDGAKRTSDLWEEFLMEVLLKDKICTWIHL
LLIEGPNKNLQATELLREFERQYSQLSKKADMEMEEIIRGMRDLQIKLARLEENTSINNS
KNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIWQGIICWKDGKIALKDRKDLLQTNFGKE
GMRALVQDYLKEHETAARESASYGTRVGDDLGGSTETNEFWASAISIMQEGKLPREALLK
TTAIIRGETGWEDPVESVSVYAYIAKSQHEALMEEKRRGNFVDTREGNSSKRQTRGEKAR
EAASQEFPVKDTSASLEKKTTETKDKGKSIAYKLLSDIEVATNLKGVLEERILNAKVEFT
LKEVLRIAKKEFHDVIIDNIKRKRQLMDETGMSHTIDARIYRDEEEVDIGYKQPKNEKNG
YNQRIHFKDYSDKKMETLSHYTRKHWARATTEVLVKVGDIEEPIVALVDHGSVINLMSKD
LYKKQKWPIDMEHGWRIRAANNTQDELYGACLDVKIRIGDVATEQHFFVQDTTSYPLIL
Download sequence
Identical sequences A9RYE5
XP_001759061.1.60028 3218.JGI72178 jgi|Phypa1_1|72178|fgenesh1_pg.scaffold_35000188

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]