SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for 3218.JGI75361 from STRING v9.0.5

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  3218.JGI75361
Domain Number - Region: 203-242
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0209
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI75361
Sequence length 705
Comment (Physcomitrella patens)
Sequence
MEINWVSEKKMVALFGLATISEIRDHITSITDCYGNSWEDFSHALKDEYFLEDADCVTKK
LFLGWIERPNKNLQETELLREFERQYSQLSQVEKLTLEPNKVDLFLQAADGKLQEKLEPL
LEDKEEDEGLTTKRKDRSNIPKTVQAPKAPVRTTPPTMPTVQPSTSLSKKADMGMEEIIR
GMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICW
KDGKIALKNREDLLQTNFGKGGMRALVQDYLKEVDDEIGGSTEISEFWTSAVSTMQEGKL
PREALLRTAATIRGRTGWEDPVESLSVHAYIAKSQHEALMEEKRRGNFDDTREGNSFKRQ
TRGDKARETASQELPVEFTLKEVLGIAKKEFHDVIIDSIKRKRQLMSETGMSHAIDARIC
RDEEEVDIGYKQPTNEKNGYNQRVRFEDSSDKEMETLSHYTRKHWARATTEVLVKPIDME
HGWAIRAANNTRGELYGACPDVKIRIGDVATEQYFFVQDTTSYPLILGQLYITATRMETK
VLDHGSAYARVRSEDSKKAVQFLTVPPNHERNRHRLREKPLPKIVEGFKDFGEEITCFKK
MLAKQGRSFAFESHEIGYLEYWEHRPTPVQILSGQVQSLRYSQPGHTEMLCSIPITGVSR
KRKDQFTRRAILFSVPFQGTLFAVNRSLKGKNGGEGLDDVSQFWI
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Identical sequences A9S6V2
XP_001762020.1.60028 jgi|Phypa1_1|75361|fgenesh1_pg.scaffold_52000143 3218.JGI75361

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