SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI75952 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI75952
Domain Number - Region: 320-344
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0994
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI75952
Sequence length 955
Comment (Physcomitrella patens)
Sequence
MEEKAPSTVPIQGVQGGRIGSSQGSLGGVSSRGSFKGQNMHMDPSIASMFQAFSLSMQQQ
QSNDRKEALATKALQAVVNKIDQFDGRNISRYLKCYVHEMELNRVSEKKMVELFGLATIQ
EIRDHITSITDRYGNSWEVFSHALKDEYFLEDADRVTKKLFLEWIERPNKNLQATELLRE
FERQYSQLSKVEKLTLELKKVDLFLQAADGELQRKLELFLEDKEEDEGLTTKWKNVEDAV
GLLTKRERRKDKRNIPKIVQALKAPVRTTPPTMPTVQPSTSLSKKVDMGMEEIIRGMQDL
QIKLTRLEENTSTKNLKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIWQGIIFWKDGKI
VLKDREDLLQTNFGKKEMRALVQDYLKEHETATRESASYGARVDDDLGGSTETSEFWASA
VSTMQEGKLPRKALLRTAATIRGATGWEDPVESLSVHAYIAKNQHEALMEEKRRGNFDDT
REGNSSKRQTRGDKAWEAASQELPVKDTLASLEEKTSYFVIEAATNLKGVLKEHILNAKV
EFTLKEVLEITKKEFHDVIIDSIKRKRQLMGEIGMSHAIDARIYKDEEEVDIGYKQPINK
KNGYNQLVRFKDYSDKEIETLSHSTRKHWARATIKVLVKVGDIEEPIVVLVDHANSTRAE
LYGAYQYVKIRIGDVATEQHFFVQDTISYPLILGQPYITATRIETKVLDDGSAYVRVRSK
DGRKVVQFLTVLPNHERNQDRLKEKPLPKIVEGFKDFGEKVDDFKRKERNRLYNIEGELR
KLGTLQDDERILGVYEENGLEDSLELITSIGLGDNDKIVEIHSREVYTILESFQAPEVIV
ETRYKTVDKKVKTVAGPLPEDSKEQMGEASKEASLRDPMSIGHQFTKETFEELKIGSHGS
LLREEITCFKKMLAKQEMNMEDLNEDKEIPQQEDESDLDNEGDEDELDKDVENIL
Download sequence
Identical sequences A9S8F7
3218.JGI75952 XP_001762631.1.60028 jgi|Phypa1_1|75952|fgenesh1_pg.scaffold_56000027

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]