SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI87758 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI87758
Domain Number - Region: 457-549
Classification Level Classification E-value
Superfamily Acid proteases 0.0124
Family Retroviral protease (retropepsin) 0.05
Further Details:      
 
Domain Number - Region: 157-196
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0126
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI87758
Sequence length 575
Comment (Physcomitrella patens)
Sequence
MVELFGLAMILKIRDHITSITDRYGNSWEDFLHALKDEYFLEDIDCITKKLFLEWIERPN
KNLQATKPLREFERQYFQLSKVEKLTLEPNKVDLFLQATDGELQRKFELLLEDKEEDEGF
TIKWKNVEDAVGLLTKRERRKDRSNILKKVQAPKAPNVSKQGYVQRCIWCDDASHTRKDC
NEFNNMIRQGIICWKDGKIALKDREDLIQTNFGKGRMRALVQDYLKEYETTARESASYGA
RVDDDLGGSTKTSEFWASTISTMQEGKLPREALLRTAATIRGSTEKRRGNFDDMREGNSS
KRQTRGDKAREVASQELPIKDTSTLLEEKTRETKDKGKSIAYKLLSDIEAATNLKGVLEE
RILKTKVEFTLKEVFGIAKKEFHDVIIDSIKQKRQLMGETRISHAIDVRIYNDEEEVTNK
KNGYNQRVCFEDYSDKEMETLSHYTRKHWTRATTEVLVKVGDKKESIVALVDHGSEINLM
SKDLYKKQKWPIDMEHGWTIRVANNTRGELYGASPDVKIWIRDVATEQHFFVQDTTSYPL
ILGQPYITATRIETKVLDDGSTYAMLYSEDGRKAV
Download sequence
Identical sequences A9T3Y3
XP_001773304.1.60028 3218.JGI87758 jgi|Phypa1_1|87758|fgenesh1_pg.scaffold_161000032

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]