SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI89062 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI89062
Domain Number - Region: 210-246
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00916
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI89062
Sequence length 325
Comment (Physcomitrella patens)
Sequence
MELNQVFEKKMVALFGLAMIPEIRDHITSIMDRYGNSWEVFSHALKDEYFLEDADRVTKK
LFKEWIERPNKNLQYSQLLKVEKLTLELNKVDLFLQAADGELQGKLELLLEDKEEHEGLT
TKWKNIEDAVGLLAKRKRRKDRSNIRKTVQAPKAQVCTTPPTMPTIQPSTSLSKKADMGM
EEIIRGMRDLQIKLARLEENTSTNNSKSVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQ
GIICWKDGKIALKDRKDLLQINFGKERMRGLVQDYLKEHETEAQESASYGVRVDDDLGGS
TKTSEFWASAISTMQEGKLPREALS
Download sequence
Identical sequences A9T7D7
XP_001774567.1.60028 3218.JGI89062 jgi|Phypa1_1|89062|fgenesh1_pg.scaffold_178000008

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]