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Domain assignment for 3218.JGI89460 from STRING v9.0.5

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  3218.JGI89460
Domain Number - Region: 559-642
Classification Level Classification E-value
Superfamily Acid proteases 0.011
Family Retroviral protease (retropepsin) 0.066
Further Details:      
 
Domain Number - Region: 366-404
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0199
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI89460
Sequence length 772
Comment (Physcomitrella patens)
Sequence
MTPELVGRLNVVPIIGLRFRFRLFRPLCRSKNVLLVKGSLKGKNGGESSDGKNQFQIQAL
TSKTDRLLEYWRNSILPSTARRPARTRVGKHDLWEEFLLGVLLKDKQQQSNDRKEALATK
ALQAVVNKIDQFDGRNISRYLSCYVPEMEINRVSEKKMVALFGLATIPKIRDNITSITDR
YRKSWEDFSHALKDEYFLEDADRITKKLFLGWIQRPNKNLQATELLREFERQYSQLSKVE
KLTLEPNKVDLFLQAADGELQEKLEPLLEDKEENEGLTTKWKNVEDAVGLLTKKEKRKDR
SNIPKTVQAPKAPVRTTPTIMPTVQPSTSLSKKADMGMEEIIRGMRDLQIKLARLEENTS
INNLKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICWKDGKIALKDREDFLQTN
FGKGGMRALVQDYLKECKTAARESASYGARVDDDLGGSTETSEFWASAVSTMQEGKLPRE
ALLRTAATIRGRTGWEDAVESLSVHAYIAKSQHEALMEEKRRRNFDDTREGNSFKRQTQG
DKAREAASQELPVGDIEEPIVALVDHGSEINLMSKDLYKKQKWPIDMEHGWAIRAANNTR
GELYGACPDVKIRIGDVATEQHFFVQDTTSYPLILGQPYITATRMETKVLDDGSAYAKIY
SREVYTMLESFQAPEVTVETRYKTADKKVKPVAGPLPEDSKEQMGEASKEASLRDPMNIG
HQCTEETFEELRLVLMVLYCRRKLLASKRCWLNKVDRLPSNLMKLGVWIQIL
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Identical sequences A9T8G1
jgi|Phypa1_1|89460|fgenesh1_pg.scaffold_183000048 XP_001774912.1.60028 3218.JGI89460

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