SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI89472 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI89472
Domain Number - Region: 541-634
Classification Level Classification E-value
Superfamily Acid proteases 0.00319
Family Retroviral protease (retropepsin) 0.051
Further Details:      
 
Domain Number - Region: 209-248
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0249
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI89472
Sequence length 909
Comment (Physcomitrella patens)
Sequence
MVALFGLATIPEIRDHITSITDRCGNSWEDYSHALKDEYFLEDADRVTKKLFLGWIERPN
KNLQATELLREFERQYSQLSKVEKLTLEPNKVDLFLQAADGELQEKLEPLLEDKEEDEGL
TTKWKNVEDAVGLLTKKERRKDRSNIPKTVQAPKAPVRTTPPTMPTIQPLTSLSKKADMG
MEEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIL
QGIICWKDGKIALKDREDLLQIDFGKGGMRALVQDYLKEHETVVRESASYGARVDDEIGG
STETSEFWASAVSTMQEGKLPREALLRTAATIRGRTGWEDPVESLSVHAYIAKSQHEALM
EEKRRGNFDDTREGNSFKRQTRGDKAREAASQELPVKDTSASLGEKTTETKDKGKSITYK
LLSDIEVATNLKGVLEERILNAKVEFTLKEVLGIAKKEFHDVIIDSIKRKRQLMSETGMS
HAIDARICRDEEEVDIGYKQPTNEKNGYNQRVRFEDSSDKGIETLSHYTRKHSARATTEV
LVKVGDIEEPIVALVDHGSEINLMSKDLYKKQKWPIDMEHGWAIRAANNTRGELYEACPD
VKIRIGDVATEQHFFVQDTTSYPLILGQPYITETRMETKVLDDGSAYARVQSEDGRKAVQ
FLRVPPNHERNRDRRDYRGTKEEVLSRDKGAFDASFIGILENGNIMYKKVDDFKRKERKR
LYNIEGQLRKIGTLQDDERILGVYEENGLEDSLELITSIGLGDNDKIVEIHSREVYTMLE
SFQAPEVTVETRYKTADKKVKPVAGPLPEDSKEQMGEASKEASLRDPMSIGHQFTEETFE
ELKIGSDGSLLPEEILRFKKMLAKQGRSFTFESHEIGCVDPNIITPMVIFTVPHKQEWLL
PNDKKTRDS
Download sequence
Identical sequences A9T8H3
jgi|Phypa1_1|89472|fgenesh1_pg.scaffold_183000060 XP_001774883.1.60028 3218.JGI89472

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]