SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI91864 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI91864
Domain Number - Region: 277-316
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0181
Family Retrovirus zinc finger-like domains 0.0071
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI91864
Sequence length 405
Comment (Physcomitrella patens)
Sequence
MDPSIASMFQAFSLSMQQQQSNDRKEALATKALQAVVNKIDQFDGRNISRYLRCYVREME
LNRVSEKKMVALFGLATILEIRDHITSITDRYGNSWEDFSHALKDEYFLEDADRVTKKLF
LGWIERPNKNLQATELLREFERQYSQLSKVEKLTLEPNKVDLFLQAVDGELQGKLELLLE
DKEEDEGLTTKWMNVEDAVGLLTKKERKKDRSNILKTVQAPKAPIRTTLPTMPTVQPSTS
LSKKADMGMEEIIQEMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHSRKDC
NEFNNMIRQGIICWKDGKIALKNREDLLQTNFGKGGMRALVQDYLKEHETVARESASYGA
RIDDEIGGSTQTSLTTGLSQSDAKTNLTQLREHSGYYGHLTQYET
Download sequence
Identical sequences A9TEX1
XP_001777163.1.60028 3218.JGI91864 jgi|Phypa1_1|91864|fgenesh1_pg.scaffold_216000025

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]