SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI92653 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI92653
Domain Number - Region: 184-224
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0288
Family Retrovirus zinc finger-like domains 0.008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI92653
Sequence length 690
Comment (Physcomitrella patens)
Sequence
MVELFGLAMIPEIRDHITLITDRYGNSWEVFSHALKDEYFLEDADHVTKKLFQEWIEQPN
KNLQATELLREFERQYSQLSKVEKWTLDPNKVDLFLQAVDGELQEKLEPLLEDKEEDEGL
TTKKDRSNIPKTVQAPKAPVCTTPPTMPTVQPSTSLSKKADMGMEEIIRGMRDLQIKLAR
LEENTSRNNSKNGSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICWKDGKIALKDME
DLLQTNVGKGGMRALVQDYLKEHEIVVRESTSYGARVDDEIGGSTETSEFWASAVSTIQE
GKLSREALLRTAATIRARTGWEDPVESLSAREATSQELPIKDTSASLEEKARETKDKGKS
IAYKLLSDIEAATNLKGVLEERILNAKVEFTLKEVLEIAKKEFHDIIIDSIKRKRQLMGE
TGMSHAIDVRIYRDEEEVDIGYKQPTNEKNGYNHRVRFEDSSDKEIETLSHYTRKHWARA
TTEVLVKVGDIEEPIVALVDHDFKIRIGDVATEQHFFVQDTTSYPLILGQPYITATQIET
KVLHDGSAYARRDYGGTKEEVLSRDEGAFDASLKERKRLYDIEGQLRKIGTLQDDERILG
VYEENRLEDSLELITSIGLGDNDKIVEIHSREVYTMLESFQAPEVTVETRYKMADKKVKH
VAGPLPEDSKEQMGEASKEASLRDPMSIGH
Download sequence
Identical sequences A9TH01
XP_001777875.1.60028 3218.JGI92653 jgi|Phypa1_1|92653|fgenesh1_pg.scaffold_228000035

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]