SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3702.AT4G08105.1-P from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3702.AT4G08105.1-P
Domain Number 1 Region: 343-388
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000157
Family Retrovirus zinc finger-like domains 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3702.AT4G08105.1-P
Sequence length 958
Comment (Arabidopsis thaliana)
Sequence
MVRGAGVCGRGRGRSRGRVLEGTSESDGHSATVEQSVGLQPEFVAPSPEDCLGANIACTA
GVGAGGAGVHAVGAEGPRVMGVVAGGAQVLEVGLAGLPRQLLERLPGVVPVQTPVAPRVA
EVQQGAAVAEEVPSYLRMMEQLQRIGTGYFSGGTSSEEADSWRSRVERNFGLSCPVKYRV
DLAVHFPIGDAHLWWRSVTARRRQADMSWANFVAKFNAKYFPEEALDRMEVRFLEMTQGE
RSSREYDREFPLLVYAGRGMEDDHAQLRRFLRGLRPDLRVRCRVSFATKAALVETATKVE
EDLQRQVVVVSPAVQPKKTQQQVAPSKPAQGQKRRWDHPFRAGQGGRVRCFSCGSLDHKV
ADCTQRAETRECYHYRERGYLRPNCPKLQWMAMAIVQPAVQQEAQVQQGVQQNVQQCTYC
SSTTGLHYATRRYQQQGDHWYDFLDSDFVNYFCCFGYHCFVMNVMVLSTDLCRDLISGRC
GGRYVVLWSITLFHYPRKVPRAGTSVGILVSSLQPLRLLEGNFRLWGELRVWIFRLQGES
MAADLIISPELYDVILGIDWVDHRVHLDCHRGRVSFERTEGRLVYQGLRPTSGSLIISAV
QAEKMIEKGCEVYLVTIYMPESVRQVAVSDIQVVQEFEDVFQSLQGLPPRRMFARLLSGR
DMDILSLWCLSVLTHLQRSGIACSRSFWMSLSSLLMTSCILRVLRSMKYIGEWRSCGSRS
CSISASEVFGRERVFWVILFLQREFQWIRRRLRLSETGLDRRMPLRSGVFLGWQGITRGF
SRGLRVWYSRLSQRRMLFLCGHRSARRVSLARRCVNCHCQSMGSLTWCIPMPREVWVGFR
CSVERLLPMHRDSRSMIWTWLRSLPRFEGLIFMAEKCRCSRIIRVNISSLNQSTGKGDGW
SWWLIMIWRSHFHQHTRSLVAEREAVSSAVHLDTYTRSQRRGGSPKCSSTRSQSRSPS
Download sequence
Identical sequences 3702.AT4G08105.1-P

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]