SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 39946.BGIOSIBCE005533 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  39946.BGIOSIBCE005533
Domain Number 1 Region: 606-678
Classification Level Classification E-value
Superfamily CAD & PB1 domains 4.25e-18
Family PB1 domain 0.0047
Further Details:      
 
Weak hits

Sequence:  39946.BGIOSIBCE005533
Domain Number - Region: 234-280
Classification Level Classification E-value
Superfamily E6 C-terminal domain-like 0.00915
Family E6 C-terminal domain-like 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 39946.BGIOSIBCE005533
Sequence length 719
Comment (Oryza indica)
Sequence
MVHEMKVFVCMRACAGGSEGGGGGSPGTEEAAAVAVKQRIARALRLYKEAAGDGGGGWMV
QVWAPARDGARRVLATRGQPFVLASQCHRLFQYRTVSLTRVFPVGGAAAADEQGLPARAF
DATAPEWTPNVQCYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLL
RVSGEVANLCNALRAVSLRGAGICNRAAECYSLAVNQIVHRDATRAAMAEVSELLITVCE
AHKLPLAQTWVRCWSCGGGGEDTEKAALTTAGAPFHLAAGADARGFRDACVEHHLQRGQG
LVGTAARAPGGGRLCADVARCSKDDYPLAHYAGMYGLAGCLVLRAELSAAAMADAAAATA
GDEEDCVVLELFLPPDCTGVAEQKAAVDAVSATIKQCSGNLKAIVISNLDDLFLDTMADG
DHQLRHEMDDLGDDQRCSDEEDLQLLENTNIGELNIHNADQIRNEDPTSQVGKNKTKRGK
AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMK
RVMESVNCSPSPPVAMPAHPALLLPPPPPPPRPCLSSTVGETSSHGSCQAPPSHAKTALR
KPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSLDAGAFDVKYLDDDH
EWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD
Download sequence
Identical sequences A2X0M8
OsIBCD004986 39946.BGIOSIBCE005533

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]