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Domain assignment for 39947.LOC_Os01g11450.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os01g11450.1
Domain Number 1 Region: 281-416
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.02e-35
Family Retroviral integrase, catalytic domain 0.0066
Further Details:      
 
Domain Number 2 Region: 410-613,642-772
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2e-26
Family Reverse transcriptase 0.031
Further Details:      
 
Domain Number 3 Region: 111-149
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000155
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os01g11450.1
Sequence length 890
Comment (Oryza sativa)
Sequence
MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS
VEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNN
NPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGRTGFHRP
NGEWVTCFCSWCWHGYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLM
SRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTK
GGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFS
NEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWKKLRPDG
TIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLN
GELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEAD
KCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLI
RGENEITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNHLEYSQIIGSLM
YLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYLAVLEGYS
DSNWISDVDEIKATSGYVFTLGGGAVSWRFCKQTILTRSTMEAELTALDTATVEAERLRD
LLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLD
YIQTARNLADPFTKGLSRNVIDNASKEMGLRPIAFLKELTFVSLTVGRSL
Download sequence
Identical sequences 39947.LOC_Os01g11450.1 LOC_Os01g11450.1|PACid:21904632 LOC_Os01g11450.1|13101.m01230|protein

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