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Domain assignment for 39947.LOC_Os03g23780.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os03g23780.1
Domain Number 1 Region: 395-764
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.67e-143
Family Reverse transcriptase 0.00013
Further Details:      
 
Domain Number 2 Region: 937-1095
Classification Level Classification E-value
Superfamily Ribonuclease H-like 8.09e-45
Family Retroviral integrase, catalytic domain 0.01
Further Details:      
 
Domain Number 3 Region: 267-300
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000068
Family Retrovirus zinc finger-like domains 0.0034
Further Details:      
 
Domain Number 4 Region: 1208-1287
Classification Level Classification E-value
Superfamily Chromo domain-like 0.000000475
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os03g23780.1
Sequence length 1305
Comment (Oryza sativa)
Sequence
MQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCT
EQEKVSFASHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPTGVVALKKREFR
ALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYTLMSTEFRDFQQL
MDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQF
YNNNTGNRSNDNRNVVARPAATSVQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVK
NVPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLESKDLDVILGMDWLSRHRGIIDCANRK
VILTNSNGKTVSFFASSPKSHGVILNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRI
DLVPGTNPSHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRM
CVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTT
RYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRL
ALDKLRYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCERSFQELKKRLVSAPVLILPDS
RKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHY
LFGNRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYHPGKANVVADALSRKS
YCNMSEGRRLPWELCQEFEKLNLGIVSKGFVATLEAKPTLFDQIRGAQVNDPDIQEIKKN
MRRGKAIGFVEDEQGTVWLGERICVPENKGLKDTIMKEAHETLYSIHPGSTKMYQDLKQQ
FWWASMRREIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSA
GHDSIWVVVDRLTKVAHFIPVKTTYTGHKLAELYMARVVCLHGVPKKIVSDRGSQFTSKF
WQKLQSELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYN
NSYQASLQMSPNEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSR
QKSYADNRRRDLVFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRRGEVAYQL
ELSPSMAGIHDVFHVSQLKKCLRVPTEEADPDRIELQEDLTYVEKPVRILEVSERKTRNR
VIRFCKVQWSNHSEEEATWEREDELKSAHPHLFSSSSESRGRDSV
Download sequence
Identical sequences Q10LB8
LOC_Os03g23780.1|13103.m02809|protein 39947.LOC_Os03g23780.1

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