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Domain assignment for 39947.LOC_Os04g04550.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os04g04550.1
Domain Number 1 Region: 457-573
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3.22e-39
Family Reverse transcriptase 0.0027
Further Details:      
 
Domain Number 2 Region: 311-418
Classification Level Classification E-value
Superfamily Acid proteases 7.79e-17
Family Retroviral protease (retropepsin) 0.033
Further Details:      
 
Domain Number 3 Region: 250-285
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000331
Family Retrovirus zinc finger-like domains 0.003
Further Details:      
 
Weak hits

Sequence:  39947.LOC_Os04g04550.1
Domain Number - Region: 177-212
Classification Level Classification E-value
Superfamily Ribosomal protein L29 (L29p) 0.0222
Family Ribosomal protein L29 (L29p) 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os04g04550.1
Sequence length 581
Comment (Oryza sativa)
Sequence
MVLTRSNGNGPNNNNNNNNGENPTLAQVLAQQTQLMNMMMQQLQNQQNQLNQGNNNAPPP
QNKLAEFLRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQENVSFASHQLHGPASEW
SLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDELSYPLMTRDYPDFQKL
VDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQRPRLTLGPQSMPQGGSSSVVHPQRQFFN
NNAGNNIRNQAPQPAKKEQGSKLVVCFNCGEPGHYADKCPKPRRVKVVPVQSNSTVPASK
ARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRP
MMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCAN
RKVTLTSNGGRVVTVHALSSESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEF
RIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQ
RMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGCNAPIFVRE
Download sequence
Identical sequences LOC_Os04g04550.1|13104.m00379|protein 39947.LOC_Os04g04550.1 LOC_Os04g04550.1|PACid:21896715

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