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Domain assignment for 39947.LOC_Os04g17940.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os04g17940.1
Domain Number 1 Region: 345-775
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 6.56e-165
Family Reverse transcriptase 0.0000181
Further Details:      
 
Domain Number 2 Region: 104-134
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000628
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      
 
Weak hits

Sequence:  39947.LOC_Os04g17940.1
Domain Number - Region: 849-893
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00116
Family Retroviral integrase, catalytic domain 0.024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os04g17940.1
Sequence length 1123
Comment (Oryza sativa)
Sequence
MTRARARELNYQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGCASSWTSSN
AAAPSTRAAAPSSSSNKLRPSTTNSTPRPSEPTRGVAATPSKSSSSVASSGRTRDIQCLR
CKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIRAE
AAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAKMVE
KLALSTQPHPQPYYIQWLNSSGKEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGS
CFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPG
LPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDKGYVRESLSPCSVPVL
LVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFYKIDLRSGYHQIRMK
LGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSR
SIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSW
PVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKL
THAPLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFA
LVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKE
NVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFV
FRANKLCIPASSNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPT
SERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDR
FPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESR
TTQMQEGEDDEDIPSNDTTTPIAQQGPMTRARARELNYQVQGCSWHGKNSNNVESVYRLL
RRSTPVVVVVGPPTSYPSPNRSLSSSHRKIGNPRCCITARITK
Download sequence
Identical sequences 39947.LOC_Os04g17940.1 LOC_Os04g17940.1|PACid:21895523 LOC_Os04g17940.1|13104.m01637|protein

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