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Domain assignment for 39947.LOC_Os04g53790.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os04g53790.1
Domain Number 1 Region: 512-681
Classification Level Classification E-value
Superfamily Ribonuclease H-like 5.92e-42
Family Retroviral integrase, catalytic domain 0.0081
Further Details:      
 
Domain Number 2 Region: 917-1139,1174-1356
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 7.71e-27
Family Reverse transcriptase 0.05
Further Details:      
 
Domain Number 3 Region: 251-293
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000103
Family Retrovirus zinc finger-like domains 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os04g53790.1
Sequence length 1405
Comment (Oryza sativa)
Sequence
MSGASSSTNSSTGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEP
ADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPE
CDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYHGGGVRDHILRMSNMASKLKPMDLG
ITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVK
DKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKGENI
ITFVNESHYVGYSRSTWWIDSGATIHACNCLKAFRSTRTTQRRESTIRVANGVEEKVEAV
GDLPLELANGFILLLRDVFYVPSLQRNLISVSKLDFDGYDCRFGSGKCELWHNNACIGLA
VLRDELYLLSLSENVNVVSSLTKENKKRKRTPDVSSKLWHCRLGHISRGRIERLVKNEIL
PPLEFSDLEQCIECIKGKFVKSIKKGAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFT
DDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSDRGGEYYGRHTPYGQVPG
PFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAI
HILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVSCHFIGY
PERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPSTQEPFF
SLPADVVPAMPVIEVPAPVVTPPVATMNESEEPVIQDSTEMVATPEEELQQPQIDNVPVQ
ETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVYNIEESHMEDDPTSYEEAMRSARSSE
WLEAMKDEMESMKLNDVWDLEEIPKGAKTVGCKWVYKTKYDSRGNIEKFKARLVAKGFTQ
REGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEKVYMAQPKGFV
MKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQENVEDNCIYSKFKNGRFIFLI
LYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLSQKTYI
EKVLKKFNMYRCSATPAPIMKGEKYGASQCPRNQYELNEMKTKPYASAVGSLQYAQVCTR
PDLAFVTGLLGRFQSNPGLEHWKLVKKVLRYLQGTKGLMLSYRRSESLQIVGYSDSDFAK
DNTKSTSGYVFTLAGGAISWKSSKQTITAGSTMYAEFIACYEATGQVNWLKKFIPGLKVV
DSIEKPLKLYCDNEPAVMYAHNNQSSGAAKHIDIKYYVVKDKVRDQTISLEHIKTERMLA
DPLTKGLPPNVFKEHVAGMGLREAL
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Identical sequences Q7XN62
LOC_Os04g53790.1|13104.m05550|protein LOC_Os04g53790.1|PACid:21892831 39947.LOC_Os04g53790.1

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