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Domain assignment for 39947.LOC_Os06g48370.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os06g48370.1
Domain Number 1 Region: 807-1236
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 9.45e-178
Family Reverse transcriptase 0.0000113
Further Details:      
 
Domain Number 2 Region: 1376-1496
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.84e-32
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Domain Number 3 Region: 647-754
Classification Level Classification E-value
Superfamily Acid proteases 2.36e-16
Family Retroviral protease (retropepsin) 0.032
Further Details:      
 
Domain Number 4 Region: 593-634
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000523
Family Retrovirus zinc finger-like domains 0.0037
Further Details:      
 
Domain Number 5 Region: 1608-1688
Classification Level Classification E-value
Superfamily Chromo domain-like 0.000014
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os06g48370.1
Sequence length 1706
Comment (Oryza sativa)
Sequence
MAGHPPNHRGEGMIDFVAELARMTLVVGYLNAPEYTTIPPLSGELPHRVRLEVHGYVGTC
LANMAVEASGGTADHACQEAAYLMMARLRERHDYIFHDTAYRYHPRRAHGDGVSSFRPTA
GENDTTFGHMCAVMRGLDRMHSDLHKATKALNDGKLMRIVALKDEIARLKKENAQLKGLP
APGGVRIRTMPRKTTTAPVRIQLAPRNPPPAAAPAAPSVPPAVPAAPVPAPAFTLSFAPA
SAARGSANGTGGCLFGMVYTRTGNRTTGEGSNGEERADGVHPNSDSGNGPPPLPENPTLA
QVMAHQTQMMAAMMQQMQQQHQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFS
STTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTW
AEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQE
KFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAHQGSHQRPRF
TPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNYHGSQPNRGTAPRPPMAPAQSGQPAQA
KKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPV
NSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVLIEIQ
RSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKG
VSLNQIETEIPVDTVEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAP
IYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALN
EVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECT
VMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEH
QLYAKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYY
RRFIENFSRIARPMTQLLKKDEKFKWTAECDKSFEELKKKLVSAPVLILPDQMKDFQVYC
DASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEV
YTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKSYCTALCIE
GMCEELRQEFEHLNMGIVEHGFVAALEARPTLVDQVRAAQVNDPEIAELKKNMRVGKARD
FHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVAHFI
PVHTTYTGKRLAELYLARIMCLHGVPRKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYH
PQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRK
CRTPLFWDQTGERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKSYADNRRRELTFEAGDY
VYLRVTPLRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLK
KCLRVPEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKVTRFCRVQWSHHSEEEATW
EREDELKAAHPHLFTSSSESRGRDSV
Download sequence
Identical sequences LOC_Os06g48370.1|PACid:21933051 39947.LOC_Os06g48370.1 LOC_Os06g48370.1|13106.m05142|protein

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