The results are sorted from lowest E-value to highest E-value. Strong classifications have a low E-value. Weak classifications have an E-value greater than 0.0001. Weak hits are shown in gray. Weak hits are not shown on the domain architecture.
The family level classification is conditional on the domain being a member of the specified superfamily. There is a possibility that the selected domain is a member of a sub-family for which no structure has yet been solved.
| Sequence: |
39947.LOC_Os09g01260.1 |
| Domain Number 1 |
Region: 840-1269 |
| Classification Level |
Classification |
E-value |
| Superfamily |
DNA/RNA polymerases |
2e-178 |
| Family |
Reverse transcriptase |
0.0000146 |
| Further Details: |
|
| |
| Domain Number 2 |
Region: 1441-1601 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
6.2e-43 |
| Family |
Retroviral integrase, catalytic domain |
0.014 |
| Further Details: |
|
| |
| Domain Number 3 |
Region: 696-800 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Acid proteases |
0.0000000000000247 |
| Family |
Retroviral protease (retropepsin) |
0.026 |
| Further Details: |
|
| |
| Domain Number 4 |
Region: 633-669 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus zinc finger-like domains |
0.000000023 |
| Family |
Retrovirus zinc finger-like domains |
0.0046 |
| Further Details: |
|
| |
| Domain Number 5 |
Region: 333-342,440-445 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Formin homology 2 domain (FH2 domain) |
0.0000131 |
| Family |
Formin homology 2 domain (FH2 domain) |
0.06 |
| Further Details: |
|
| |
| Domain Number 6 |
Region: 1713-1792 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Chromo domain-like |
0.000019 |
| Family |
Chromo domain |
0.013 |
| Further Details: |
|
| |
| Sequence: |
39947.LOC_Os09g01260.1 |
| Domain Number - |
Region: 569-637 |
| Classification Level |
Classification |
E-value |
| Superfamily |
beta-sandwich domain of Sec23/24 |
0.0654 |
| Family |
beta-sandwich domain of Sec23/24 |
0.029 |
| Further Details: |
|
| |
The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by 
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Information Content (IC) is an information theoretic score measured in bits of how informative it is to assign a given ontological term to a domain archtecture. The higher the score the more informative it is to talk about the term given the domain architecture.
H-score (hypergeometric score) indicates the strength of assigning an ontological term to this domain architecture. Assignments with higher scores are of a better quality. Details for the methodology be found on the dcGO website.
| Biological Process |
IC (bits) |
H-Score |
| Molecular Function |
IC (bits) |
H-Score |
| Cellular Component |
IC (bits) |
H-Score |
