SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 485918.Cpin_1900 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  485918.Cpin_1900
Domain Number 1 Region: 269-566
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain III 2.62e-84
Family DNA repair protein MutS, domain III 0.000000792
Further Details:      
 
Domain Number 2 Region: 568-804
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 7.58e-56
Family ABC transporter ATPase domain-like 0.00000118
Further Details:      
 
Domain Number 3 Region: 115-268
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain II 1.57e-39
Family DNA repair protein MutS, domain II 0.00051
Further Details:      
 
Domain Number 4 Region: 8-114
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain I 6.54e-38
Family DNA repair protein MutS, domain I 0.0000623
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 485918.Cpin_1900
Sequence length 868
Comment (Chitinophaga pinensis DSM 2588)
Sequence
MAKSKSVETPLMQQHNAIKARYPDAVLLFRVGDFYETFNDDAIIASKVLGIVLTKRANGS
ASQQDLAGFPHHSLDTYLHKLVKAGYRVAVCDQLEDPKMAKGIVKRGVTEMVTPGVAVND
KILENASNNFLAAVHFGKELTGVAFLDISTGEFFVAQGNLEYVDKLLQSFKPAEVIFARP
QQKHFKEQFGSKFYTYTLEEWIFTTNYAEETLLKQFETHSLKGFGVDGLQDAIIAAGACL
HYLRDTEHPHLQHITNIQRIEQDDFLWMDRFTIRNLELLGSSVENGHTLLKTLDTTVTPM
GARLLKRWMVLPLRDIKQINERLDVTEHFIKETDLSRDVLQHLKQTGDLERLVSKIPLRK
INPREVMMLAKALQQVEGIKQLLAKTGHPYLTAIGEKLNPCPGILCRILEQIVETPPILV
SKGGVIQNGIHTELDNLRTIAHSGKEYLLRIQQTESDATGIPSLKVAFNNVFGYYLEVTN
AHKSKVPENWIRKQTLANAERYITPELKEYEEKIVGAEEKILALEIQLFDELLLALQPHI
QAIQQNAQLMARLDCLLSFANNAIQYKYRRPNVTEGYHLDIREGRHPVIERGLPPGESYV
ANDIVLDKEEQQIIILTGPNMSGKSALLRQTALITLMAHMGSFVPASAAEIGLTDKIFTR
VGASDNLSGGESTFMVEMNETASIINNITPRSLVILDEIGRGTSTYDGISIAWSIVEYLH
DMTPHKPKTLFATHYHELNELENKHGRIKNYHITNKESGNKVIFLRKLAPGGSRHSFGIH
VARMAGMPPQLLQRANEVLSHLEQKHIDAPLEKHVKEMAGPTQKVQLSIFDAHSDTFKEI
RDMLNDVDINRLTPVEALLKLNEIKNLL
Download sequence
Identical sequences C7PB24
WP_012789572.1.2976 gi|256420944|ref|YP_003121597.1| 485918.Cpin_1900

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]