SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 123214.PERMA_0005 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  123214.PERMA_0005
Domain Number 1 Region: 3-320
Classification Level Classification E-value
Superfamily FMN-binding split barrel 3.92e-120
Family UbiD middle domain-like 0.000000129
Further Details:      
 
Domain Number 2 Region: 321-479
Classification Level Classification E-value
Superfamily UbiD C-terminal domain-like 7.85e-56
Family UbiD C-terminal domain-like 0.0000226
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 123214.PERMA_0005
Sequence length 503
Comment (Persephonella marina EX H1)
Sequence
MAYRDLREFIKDLDKNGELIRIKDRVSPVLEITEIADNVMKLPDGGKALLFENVEGSDMP
VLINAFGSEKRMKMALGVERFEDIGWKLYRILKPEVPHTFLDKLKRIPELKKLNDALPKT
VKTGSVKEVIKKGDDIDLFEIPVLKCWPKDGGRFITLPQVISKDPENGLRNVGMYRIQIL
DRDKVAVHWQIHKGGAKHYWKYKKLGQKIPVAIAIGGDPVLTYVASAPLPEDVDEYLFAG
IIRGKGVELVRCETVDLEVPADAEIIIEGYIDPEEPLVDEGPFGDHTGFYTPVEKYPMMH
VTAVTHRKDPVYLTTIVGRPPMEDGWMGKATERIFLPLIKFNLPEVVDYNLPVSGCFHNF
CFVSIKKQYPGHAYKVMDALWGMGQMMFTKNIVVFDEWVDVQSIDDVLWIWGNNVDPARD
VVIKKGVIDVLDHSTDLVGFGGKMGIDATTKWKGEGYQREWPELAVMDESVKERMKPVVN
RVMKEIMKSIIDKEVKKAKKYLK
Download sequence
Identical sequences C0QSY8
WP_012676487.1.53201 123214.PERMA_0005 gi|225849569|ref|YP_002729803.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]