SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3218.JGI76116 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI76116
Domain Number - Region: 198-236
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00607
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI76116
Sequence length 317
Comment (Physcomitrella patens)
Sequence
MGLSQSDAKDQFDPITGTSRSYYGPLSQFDARTNLIQLREHPGCPILYAILGNIVFGFLG
EVSGGDSSKGQEKLTLEPNKVDLFLQAADGELQGKLEFLLEDKEEDEGLTTKWKNVEDAV
GLLTKRERRKDRRNIPKTVQAPKAPICTTPPTMPTVQPSTSLSKKADMGMEEIIRGMRDL
QIKLARLEENTSTNNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQRIICWKDGKI
ALKDREDLLQTNFGKGGMRALVQDYLKEHETAARESASYGARIDDEIGGSTKTSEFWASA
VSTKQEGKLPREALLRT
Download sequence
Identical sequences A9S8W0
XP_001762784.1.60028 jgi|Phypa1_1|76116|fgenesh1_pg.scaffold_57000024 3218.JGI76116

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]