SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 3218.JGI80483 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI80483
Domain Number - Region: 389-484
Classification Level Classification E-value
Superfamily Acid proteases 0.00197
Family Retroviral protease (retropepsin) 0.036
Further Details:      
 
Domain Number - Region: 148-188
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0167
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI80483
Sequence length 624
Comment (Physcomitrella patens)
Sequence
MEVFPHALKDEYFLEDVDHVTKKLFLEWIERPNKNLQATELLREFERQYSQLSKVEKLTL
EPNKVDLFLQAADGELERKNDRSNILKTIQAPKAPVRTTPPTMPTVQPSTSLSKKADMGM
EEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIWQ
GIICWKDGKIALKNREELLQTNFGKGGMRALVQDYLKEHETAARESTSYGARVDDEIGGS
TETSEFWASAVSTMQEGKLPREALLGTATIIRGRTGWEDPVESLSVHAYIAKSQHEALME
EKRRGNFDDTREGNSSKRQTRGDKAREAASQELPVKDTSASLEEKTKETKDKGKSIAYKL
LSDIEAATNLKGVLEERILNAKARATTEVLVKVGDIEEPIVALVDHGSEINLMSKDLYKK
PKWPIDMEHGWTIRAANNTQGELYGACPDVKIWIGDVATEQHFFVQDTMSYPLILGQPYI
TATRMETKVPEDGSAYARVCSQDGRKVVQFLTVPPNHERNRDRLREKPLPKIVEGFKDFG
KLGTLQDDERILGVYEENGLEDSLELITSIGLGDNDKIVEIHSREVYTVLESFQAPEVTV
ETRYKTVDKKVKPVAEPLPEDSKE
Download sequence
Identical sequences A9SK44
jgi|Phypa1_1|80483|fgenesh1_pg.scaffold_87000006 XP_001766783.1.60028 3218.JGI80483

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]