SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 359249 from TargetDB

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  359249
Domain Number 1 Region: 48-263
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.00000000000000424
Family Galacturonase 0.041
Further Details:      
 
Domain Number 2 Region: 273-436
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.0000000000536
Family Galacturonase 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 359249
Sequence length 439
Comment $ JCSG $ SQ82313 $ PDBT23621 $
Sequence
MRKTKMSIFGVMVFTCMIFVVGLNASKLKAQQVDATWTTIDTSKCSESSLNNVINKLIGE
GQRKFYILNGVYNLNGSIELNQPNVIIQGQSKECTKIVQSNPLKNSIEINSDGIQVSNLN
VNNQSGGVAVSCRNSNNVNVQGCVIYGAQNDQAVVFSKDGGNDIQDVENSNLNMCNILEG
NEIHSYFSDGGVLFSKQNHGTIDSNFIVGSRISFRLCRNSTVSYNKIKNSATNGIRYTVP
AYSNNILGNIIRNTRSSGILVTREKPWVTPTDYRASGSKIDGNTITGSRYFGIEINNLKG
AEVEGNVINNIDFNGIYILYSDSIQVVQNQIGNSNYLLVDGKTQNWDERYNSGIILDYMV
SNSTLDKNTITNSMDNCPYGIRIQPDASNCKNTITNNIINGFFKNGISMRSDAPFSNIMG
DGNVVNIITMPSSSNANTK
Download sequence
Identical sequences Q97DC1
272562.CA_C3558 gi|384460276|ref|YP_005672696.1| 359249 gi|15896793|ref|NP_350142.1| NP_350142.1.94244 WP_010966822.1.17575 WP_010966822.1.17905 WP_010966822.1.48544 WP_010966822.1.57811 WP_010966822.1.71350 WP_010966822.1.92914 gi|337738765|ref|YP_004638212.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]