SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|345013766|ref|YP_004816120.1| from Streptomyces violaceusniger Tu 4113

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|345013766|ref|YP_004816120.1|
Domain Number 1 Region: 8-111
Classification Level Classification E-value
Superfamily Putative DNA-binding domain 2.82e-23
Family DNA-binding N-terminal domain of transcription activators 0.0023
Further Details:      
 
Domain Number 2 Region: 131-272
Classification Level Classification E-value
Superfamily Probable bacterial effector-binding domain 0.000000000014
Family Multidrug-binding domain of transcription activator BmrR 0.052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|345013766|ref|YP_004816120.1|
Sequence length 292
Comment MerR family transcriptional regulator [Streptomyces violaceusniger Tu 4113]
Sequence
MTGMDATLPIGDFARATHLSVKTLRYYHRVGLLEPDEVDRHTGYRHYTTAQIPTAQIIRR
FRALDMPIEQVAKVLAAPDLETRNALIAAHLNQMEQELARTQNAVASLRDLLTPPPGAAR
AEIGRRRVLATPAAAITETVDVAEALTWYQGALGEIYATLDAQGLAADGPAGGIFSNDLF
THEQGSATIFVPCAGPVRPMGRVAALVVPPVELATIVHRGPHTNIDLAYGALGVYVAEHA
LAVGGPVREYYPVGRHESTDTAEWRTEICWPIFHTGPAPDDSGAPRDGDGGR
Download sequence
Identical sequences G2P839
gi|345013766|ref|YP_004816120.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]