SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A060NRX2 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A060NRX2
Domain Number 1 Region: 50-173
Classification Level Classification E-value
Superfamily Insert subdomain of RNA polymerase alpha subunit 1.83e-38
Family Insert subdomain of RNA polymerase alpha subunit 0.0000279
Further Details:      
 
Domain Number 2 Region: 2-50,174-228
Classification Level Classification E-value
Superfamily RBP11-like subunits of RNA polymerase 7.26e-32
Family RNA polymerase alpha subunit dimerisation domain 0.00034
Further Details:      
 
Domain Number 3 Region: 250-322
Classification Level Classification E-value
Superfamily C-terminal domain of RNA polymerase alpha subunit 8.5e-27
Family C-terminal domain of RNA polymerase alpha subunit 0.0000226
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A060NRX2
Sequence length 328
Comment (tr|A0A060NRX2|A0A060NRX2_9BURK) Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059} KW=Complete proteome; Reference proteome OX=1458426 OS=Comamonadaceae bacterium B1. GN=SMCB_0050 OC=Comamonadaceae.
Sequence
MLNNLLKPKNIQVEHLGPNHAEVTLEPFERGYGHTLGNALRRVLLASMVGHAPTEVTISG
VLHEFSSIDGVQEDTVDMLLNLKGVVFKLHGRDEVTLSLRKEVEGLVTAGDIQTPHDVEI
LNPQHPIATLSAGTKLDMQIKVEKGRGYVPGNLRRGEDSTRSIGRILLDASFSPVKRVSY
AVENARVEQRTDLDKLVLDIETNGAVAPEEAVRAAAKILVEQLAVFAQLVRDESSDFGAS
PSRASQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN
EIKEVLASRGLTLGMKLESWPPAGLDKH
Download sequence
Identical sequences A0A060NRX2
WP_045534217.1.93424

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]