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Domain assignment for A0A068JFC5 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A068JFC5
Domain Number 1 Region: 8-137
Classification Level Classification E-value
Superfamily Coronavirus RNA-binding domain 1.26e-46
Family Coronavirus RNA-binding domain 0.00027
Further Details:      
 
Domain Number 2 Region: 272-375
Classification Level Classification E-value
Superfamily Nucleocapsid protein dimerization domain 2.01e-33
Family Coronavirus nucleocapsid protein 0.0018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A068JFC5
Sequence length 441
Comment (tr|A0A068JFC5|A0A068JFC5_9ALPC) Nucleoprotein {ECO:0000256|PIRNR:PIRNR003888, ECO:0000256|SAAS:SAAS00869216} OX=28295 OS=Porcine epidemic diarrhea virus. GN=N OC=Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus.
Sequence
MASVSFQDRGRKRVPLSLYAPLRVTNDKPLSKVLANNAVPTNKGNKDQQIGYWNEQIRWR
MRRGERIEQPSNWHFYYLGTGPHADLRYRTRTEGVFWVAKEGAKTEPTNLGVRKASEKPI
IPNFSQQLPSVVEIVEPNTPPTSRANSRSRSRGNGNNRSRSPSNNRGNNQSRGNSQNRGN
NQGRGASQNRGGNNNNNNKSRNQSKTRNQSNDRGGVTSRDDLVAAVKDALKSLGIGENPD
KLKQQQKPKQERSDSSGKNTPKKNKSRATSKERDLKDIPEWRRIPKGENSVAACFGPRGG
FKNFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKMTVPKS
DPNVELLVSQVDAFKTGNAKPQRKKEKKNKRETTQQLNEDAIYDDVGLPSDSTHANLEWD
TAVDGGDTAVEIINEIFDTGN
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Identical sequences A0A068JFC5

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