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Domain assignment for A0A0A6Z7Y6 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0A6Z7Y6
Domain Number 1 Region: 59-175
Classification Level Classification E-value
Superfamily Insert subdomain of RNA polymerase alpha subunit 9.77e-35
Family Insert subdomain of RNA polymerase alpha subunit 0.00064
Further Details:      
 
Domain Number 2 Region: 14-59,178-231
Classification Level Classification E-value
Superfamily RBP11-like subunits of RNA polymerase 1.86e-22
Family RNA polymerase alpha subunit dimerisation domain 0.012
Further Details:      
 
Domain Number 3 Region: 268-329
Classification Level Classification E-value
Superfamily C-terminal domain of RNA polymerase alpha subunit 2.22e-21
Family C-terminal domain of RNA polymerase alpha subunit 0.0009
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A0A6Z7Y6
Sequence length 340
Comment (tr|A0A0A6Z7Y6|A0A0A6Z7Y6_LEPPR) Plastid-encoded RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059} OX=133430 OS=peroffskyana). GN=rpoA OC=Spermatophyta; Cycadidae; Cycadales; Zamiaceae; Lepidozamia.
Sequence
MIRDEILVSTQTPRWRCIGSRADSKRLHYGRFALSPLQKGQASTIGIAMRRALLGEVEGT
CITRAKLEKVTHEYSAMIGIEESVHDISINLKEIVLRSDPYGTREASICIVGPRNVTAQD
IMLPPSVKIIDATQHIASLTKSITFDIKLWIEKDRGYRIQSPNNYQDGVFPIDAVSMPVR
NTNYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYGASRNLIDLFIPFLRAEEHNIDGM
DNQNGHNMPFFPLSNISTDIERMEEEVAFKHIFIDQLELSPRVYNCLGRVNIHTLSDLLN
YSQEDLMRIGHFGKKSVEQVSKVLQKRFAVDLPRNKFQIH
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Identical sequences A0A0A6Z7Y6

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