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Domain assignment for A0A0F6ZE15 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0F6ZE15
Domain Number 1 Region: 59-177
Classification Level Classification E-value
Superfamily Insert subdomain of RNA polymerase alpha subunit 6.98e-36
Family Insert subdomain of RNA polymerase alpha subunit 0.00049
Further Details:      
 
Domain Number 2 Region: 13-59,178-231
Classification Level Classification E-value
Superfamily RBP11-like subunits of RNA polymerase 6.59e-25
Family RNA polymerase alpha subunit dimerisation domain 0.018
Further Details:      
 
Domain Number 3 Region: 268-333
Classification Level Classification E-value
Superfamily C-terminal domain of RNA polymerase alpha subunit 3.4e-16
Family C-terminal domain of RNA polymerase alpha subunit 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A0F6ZE15
Sequence length 337
Comment (tr|A0A0F6ZE15|A0A0F6ZE15_9LILI) Plastid-encoded RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059} OX=325984 OS=Dioscorea zingiberensis. GN=rpoA OC=Dioscorea.
Sequence
MVREEITESTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAVRRALLGEIEGT
CITRAKSEKVPHEYSTVVGIEESVHEILLNLKEIVLRSNLYGIRDASICVRGPRYVTAQD
IISPPSVEIVDTTQYIANLTEPIDLRIELQIKRDRGYRMKPITNSHDGSYSIDAVFMPVR
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEENMNFE
ENKNKFTLPPFTFQDRLDNLKKNKKGIPLKYIFIDQSELPSRTYNCLKRCDIHTLLDLLS
KGQENLIKIEYFRIEDVKQILDTLQKHFSVDLPKKKF
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Identical sequences A0A0F6ZE15

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