SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A1U8MA66 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A1U8MA66
Domain Number 1 Region: 11-217
Classification Level Classification E-value
Superfamily SET domain 2.22e-26
Family RuBisCo LSMT catalytic domain 0.01
Further Details:      
 
Domain Number 2 Region: 209-314
Classification Level Classification E-value
Superfamily RuBisCo LSMT C-terminal, substrate-binding domain 0.000000602
Family RuBisCo LSMT C-terminal, substrate-binding domain 0.0084
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A1U8MA66
Sequence length 403
Comment (tr|A0A1U8MA66|A0A1U8MA66_GOSHI) protein SET DOMAIN GROUP 40-like isoform X3 {ECO:0000313|RefSeq:XP_016723717.1} KW=Complete proteome; Reference proteome OX=3635 OS=Gossypium hirsutum (Upland cotton) (Gossypium mexicanum). GN=LOC107935586 OC=Gossypium.
Sequence
MKLCLSHSTPILLTLLPRQVFTVCLLYEINKGKSSPWHPYFLHLPRSYSILAAFGELETQ
ALQVDYAIWAAQKAVTKAKYEWEQAFTLMKELKLKPPLLTFRAWIWATGTISSRTLHIPW
DEAGCLCPVGDLFNYAAPTEDPDSFENVENWQNEHAKDDLDIHHSQRLTDGGYEEDVAAY
CFYAKKNYNVGEQVLLSYGTYTNLELLEYYGFLLEDNPNEKVFIPLDLDMYSLSCWPKES
LYIHQNGRPSFALMCALRLWATPLQQRKSIGHLAYSGCPISKGNEIYVMKWIGKKCDALL
KEIPTSVEEDKSLVHLMDKMEEYENLGEWVKKASAVFGGEFGDNNILKAAYGVEGDDELT
SLVRTKMLIDRWKLAVQWRLMYKTVVARCISYCTDIVNSLSTQ
Download sequence
Identical sequences A0A1U8MA66
XP_016723717.1.88148

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]